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Molecular Dynamics Inc dynamics flexible fitting method
Dynamics Flexible Fitting Method, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dynamics+flexible+fitting+method/dynamics+flexible+fitting/pmc11062599-290-34-33
Average 90 stars, based on 1 article reviews
dynamics flexible fitting method - by Bioz Stars, 2026-11
90/100 stars

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Article Title: Phage G structure at 6.1 Å resolution, condensed DNA, and host identity revision to a Lysinibacillus
Article Snippet: This structure was then refined to the densities of gp27 in the virion 3D map using Molecular Dynamics Flexible Fitting (MDFF) method [ 26 ].

Article Title: Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8.
Article Snippet: In brief Avian MXRA8 is an entry receptor for alphaviruses belonging to the Western equine encephalitis complex that have bird reservoirs but not for those in the Semliki Forest complex, which instead utilize mammalian MXRA8.. Avian MXRA8 and mammalian MXRA8 engage different alphaviruses using inverted binding modes and distinct regions.. A duck domain 1-mouse domain 2 chimeric MXRA8 serves as a decoy-receptor and inhibits infection of multiple alphaviruses from distinct antigenic complexes in vitro and in vivo.

Article Title: Dynamic conformational switching underlies TFIIH function in transcription and DNA repair and impacts genetic diseases
Article Snippet: The TFIIH–XPA–DNA structure was then refined in a 10-ns simulation using the molecular dynamics flexible fitting (MDFF) method – .The MDFF biasing potential was applied with a scaling factor ξ of 0.3.

Article Title: Structural insights into the modulation of coronavirus spike tilting and infectivity by hinge glycans.
Article Snippet: The complete model was then fitted to the experimental density maps using the Molecular Dynamics Flexible Fitting (MDFF) method82.

Article Title: Late steps in bacterial translation initiation visualized using time-resolved cryo-EM
Article Snippet: We obtained near-atomic resolution models of the 30S IC and 70S IC by employing the Molecular Dynamics Flexible Fitting (MDFF) method ( ) and using an atomic, cryo-EM-derived model of a 70S IC (PDB ID: 3JCJ) as the initial starting model.

Article Title: Integrated analyses reveal a hinge glycan regulates coronavirus spike tilting and virus infectivity
Article Snippet: The complete model was then fitted to the experimental density maps using the Molecular Dynamics Flexible Fitting (MDFF) method .

Article Title: Joachim Frank’s Binding with the Ribosome
Article Snippet: In 2013, the T. brucei ribosome was also mapped at 5.5 Å resolution, and a near-atomic model was built using homology modeling, ab initio rRNA modeling based on covariation analysis, and using the molecular dynamics flexible fitting method 93 .

Article Title: Construction of atomic models of full hepatitis B vaccine particles at different stages of maturation.
Article Snippet: Hepatitis B, one of the world's most common liver infections, is caused by the Hepatitis B Virus (HBV).. Via the infected cells, this virus generates non pathogen particles with similar surface structures as those found in the full virus.. These particles are used in a recombinant form (HBsAg) to produce efficient vaccines.



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Molecular Dynamics Inc dynamics flexible fitting method
Dynamics Flexible Fitting Method, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dynamics+flexible+fitting+method/dynamics+flexible+fitting/pmc11062599-290-34-33
Average 90 stars, based on 1 article reviews
dynamics flexible fitting method - by Bioz Stars, 2026-11
90/100 stars
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